Transcript: ENSMUST00000188702.2 1700020L24Rik-202

Description

RIKEN cDNA 1700020L24 gene [Source:MGI Symbol;Acc:MGI:1913580]

Location

Chromosome 11: 83,330,957-83,331,654 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 7 domains and features, is associated with 621 variant alleles and maps to 72 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000035085.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000037378.6	1700020L24Rik-201	949	189aa	ENSMUSP00000042098.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS25165	Q8C1R3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000188702.2	1700020L24Rik-202	564	111aa	ENSMUSP00000140664.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A087WRJ9	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 564 bps, Translation length: 111 residues

Transcript Support Level (TSL)

TSL:3

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSMUST00000188702.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000188702.2 1700020L24Rik-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000188702.2 1700020L24Rik-202

Summary

About Us

Get help

Our sister sites

Follow us