Transcript: ENSMUST00000184891.2 Rhox7a-202

Description

reproductive homeobox 7A [Source:MGI Symbol;Acc:MGI:3580246]

Gene Synonyms

Rhox7

Location

Chromosome X: 36,926,729-36,930,152 forward strand.

About this transcript

This transcript has 3 exons, is associated with 360 variant alleles and maps to 45 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000071767.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000096454.2	Rhox7a-201	983	281aa	ENSMUSP00000094193.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30081	A2A4F1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000184891.2	Rhox7a-202	409	22aa	ENSMUSP00000138811.2	Nonsense mediated decay		V9GWS7	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 1, Transcript length: 409 bps, Translation length: 22 residues

Transcript Support Level (TSL)

TSL:5

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSMUST00000184891.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000184891.2 Rhox7a-202

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Transcript: ENSMUST00000184891.2 Rhox7a-202

Summary

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