Transcript: ENSMUST00000183065.2 Sox14-202

Description

SRY (sex determining region Y)-box 14 [Source:MGI Symbol;Acc:MGI:98362]

Location

Chromosome 9: 99,756,273-99,757,708 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 10 domains and features, is associated with 626 variant alleles and maps to 91 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000053747.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000054819.10	Sox14-201	2065	240aa	ENSMUSP00000091310.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS57695	Q04892 Q3UUP3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000183065.2	Sox14-202	1274	177aa	ENSMUSP00000138239.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		S4R1I8	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 1,274 bps, Translation length: 177 residues

Transcript Support Level (TSL)

TSL:3

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSMUST00000183065.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000183065.2 Sox14-202

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Transcript: ENSMUST00000183065.2 Sox14-202

Summary

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