Transcript: ENSMUST00000181366.3 Pou2af2-202

Description

POU domain, class 2, associating factor 2 [Source:MGI Symbol;Acc:MGI:1917059]

Gene Synonyms

1810046K07Rik, OCA-B homolog, Oca-t1

Location

Chromosome 9: 51,200,986-51,224,015 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 6 domains and features, is associated with 1568 variant alleles and maps to 97 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000036027.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000238450.3	Pou2af2-203	1332	287aa	ENSMUSP00000158857.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9D8Q6-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000039959.11	Pou2af2-201	1318	235aa	ENSMUSP00000036912.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS52792	Q9D8Q6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000181366.3	Pou2af2-202	1270	235aa	ENSMUSP00000137735.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS52792	Q9D8Q6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 1,270 bps, Translation length: 235 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9D8Q6

CCDS

This transcript is a member of the Mouse CCDS set: CCDS52792

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000181366.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000181366.3 Pou2af2-202

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Transcript: ENSMUST00000181366.3 Pou2af2-202

Summary

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