Transcript: ENSMUST00000178923.2 Ldlrad2-201

Description

low density lipoprotein receptor class A domain containing 2 [Source:MGI Symbol;Acc:MGI:3588210]

Location

Chromosome 4: 137,299,394-137,301,880 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 5 domains and features, is associated with 848 variant alleles and maps to 57 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000094035.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000238941.2	Ldlrad2-203	1183	344aa	ENSMUSP00000158970.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A5F8MPH1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000178923.2	Ldlrad2-201	429	142aa	ENSMUSP00000136854.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS18819	Q3V0V0	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000238480.2	Ldlrad2-202	1828	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 429 bps, Translation length: 142 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS18819

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000178923.2

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000178923.2 Ldlrad2-201

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Transcript: ENSMUST00000178923.2 Ldlrad2-201

Summary

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