Transcript: ENSMUST00000177244.4 Vmn2r96-202

Description

vomeronasal 2, receptor 96 [Source:MGI Symbol;Acc:MGI:3644514]

Gene Synonyms

EG433070

Location

Chromosome 17: 18,793,413-18,821,975 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 38 domains and features, is associated with 2454 variant alleles and maps to 178 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000091679.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000177244.4	Vmn2r96-202	6372	856aa	ENSMUSP00000135095.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PZU5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000165692.8	Vmn2r96-201	2343	664aa	ENSMUSP00000131564.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49974	H3BJR5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000231261.2	Vmn2r96-203	6208	75aa	ENSMUSP00000156268.2	Nonsense mediated decay		A0A338P747	-
ENSMUST00000231286.2	Vmn2r96-204	6058	856aa	ENSMUSP00000156012.2	Nonsense mediated decay		E9PZU5	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 6,372 bps, Translation length: 856 residues

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000177244.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

inferred transcript model

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000177244.4 Vmn2r96-202

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Transcript: ENSMUST00000177244.4 Vmn2r96-202

Summary

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