Transcript: ENSMUST00000176268.2 Gm21988-202

Description

predicted gene 21988 [Source:MGI Symbol;Acc:MGI:5439457]

Location

Chromosome 11: 70,126,076-70,130,629 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 1 domain and feature, is associated with 654 variant alleles and maps to 452 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000040904.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000176268.2	Gm21988-202	1621	98aa	ENSMUSP00000135088.2	Nonsense mediated decay	CCDS36204	Q8K3C0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000176116.8	Gm21988-201	1688	71aa	ENSMUSP00000135134.2	Nonsense mediated decay		H3BJV0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 8, Coding exons: 3, Transcript length: 1,621 bps, Translation length: 98 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8K3C0

CCDS

This transcript is a member of the Mouse CCDS set: CCDS36204

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000176268.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

not organism-supported [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000176268.2 Gm21988-202

Summary

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Transcript: ENSMUST00000176268.2 Gm21988-202

Summary

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