Transcript: ENSMUST00000170988.2 Cyp39a1-201

Description

cytochrome P450, family 39, subfamily a, polypeptide 1 [Source:MGI Symbol;Acc:MGI:1927096]

Gene Synonyms

oxysterol 7-alpha-hydroxylase

Location

Chromosome 17: 43,978,316-44,062,322 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 15 domains and features, is associated with 6836 variant alleles and maps to 229 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000023963.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000170988.2	Cyp39a1-201	3053	470aa	ENSMUSP00000130073.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28799	Q544S6 Q9JKJ9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000233627.2	Cyp39a1-204	2338	404aa	ENSMUSP00000156870.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2W4C8	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000233437.2	Cyp39a1-203	2227	420aa	ENSMUSP00000156567.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2WCK5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000233165.2	Cyp39a1-202	520	64aa	ENSMUSP00000156653.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2W7Q2	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 3,053 bps, Translation length: 470 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9JKJ9

CCDS

This transcript is a member of the Mouse CCDS set: CCDS28799

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000170988.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000170988.2 Cyp39a1-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000170988.2 Cyp39a1-201

Summary

About Us

Get help

Our sister sites

Follow us