Transcript: ENSMUST00000170643.4 Rhox9-202

Description

reproductive homeobox 9 [Source:MGI Symbol;Acc:MGI:1890128]

Gene Synonyms

1600026O01Rik, Gpbox, Psx2

Location

Chromosome X: 36,987,974-36,990,581 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 11 domains and features, is associated with 740 variant alleles and maps to 154 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000068048.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000089062.8	Rhox9-201	882	227aa	ENSMUSP00000086462.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30083	Q9EQM5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000170643.4	Rhox9-202	2422	181aa	ENSMUSP00000126022.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A4FTZ4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 2,422 bps, Translation length: 181 residues

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000170643.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000170643.4 Rhox9-202

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Transcript: ENSMUST00000170643.4 Rhox9-202

Summary

About Us

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