Transcript: ENSMUST00000164884.9 Ciao2b-203

Description

cytosolic iron-sulfur assembly component 2B [Source:MGI Symbol;Acc:MGI:1915773]

Gene Synonyms

1110019N10Rik, Fam96b

Location

Chromosome 8: 105,366,470-105,368,597 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 7 domains and features, is associated with 585 variant alleles and maps to 162 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000031879.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000164884.9	Ciao2b-203	918	163aa	ENSMUSP00000132725.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS52649	Q9D187	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000093234.5	Ciao2b-201	639	136aa	ENSMUSP00000090921.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8WHV1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000163140.2	Ciao2b-202	807	91aa	ENSMUSP00000148786.2	Nonsense mediated decay		A0A1D5RMI0	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 918 bps, Translation length: 163 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9D187

CCDS

This transcript is a member of the Mouse CCDS set: CCDS52649

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000164884.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000164884.9 Ciao2b-203

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Transcript: ENSMUST00000164884.9 Ciao2b-203

Summary

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