Transcript: ENSMUST00000159650.8 Pdxk-ps-202

Description

pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene [Source:NCBI gene (formerly Entrezgene);Acc:435518]

Gene Synonyms

Gm9743

Location

About this transcript

This transcript has 9 exons, is associated with 1830 variant alleles and maps to 120 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000235497.2	Pdxk-ps-204	579	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
ENSMUST00000159650.8	Pdxk-ps-202	2342	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000183934.2	Pdxk-ps-203	680	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 9, Coding exons: 0, Transcript length: 2,342 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000159650.8

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

overlaps pseudogene [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.