Transcript: ENSMUST00000144914.3 Cdhr18-201

Description

cadherin related family member 18 [Source:MGI Symbol;Acc:MGI:2685127]

Gene Synonyms

Gm281, LOC238939

Location

About this transcript

This transcript has 19 exons, is annotated with 42 domains and features, is associated with 6521 variant alleles and maps to 138 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000144914.3	Cdhr18-201	2952	860aa	ENSMUSP00000121887.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3Z1Y0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 19, Coding exons: 19, Transcript length: 2,952 bps, Translation length: 860 residues

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000144914.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.