Transcript: ENSMUST00000142613.2 Vamp8-202

Description

vesicle-associated membrane protein 8 [Source:MGI Symbol;Acc:MGI:1336882]

Gene Synonyms

endobrevin

Location

Chromosome 6: 72,362,211-72,366,894 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 12 domains and features, is associated with 840 variant alleles and maps to 248 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000050732.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000059983.10	Vamp8-201	820	101aa	ENSMUSP00000059501.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS39514	A0A0R4J0R1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000142613.2	Vamp8-202	2076	75aa	ENSMUSP00000145955.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0U1RPE8	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 2,076 bps, Translation length: 75 residues

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000142613.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000142613.2 Vamp8-202

Summary

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Transcript: ENSMUST00000142613.2 Vamp8-202

Summary

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