Transcript: ENSMUST00000141397.2 4930558K02Rik-201

Description

RIKEN cDNA 4930558K02 gene [Source:MGI Symbol;Acc:MGI:1922618]

Location

Chromosome 1: 161,769,660-161,796,717 reverse strand.

About this transcript

This transcript has 7 exons, is associated with 1829 variant alleles and maps to 114 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000086277.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000162676.2	4930558K02Rik-202	983	182aa	ENSMUSP00000124751.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56649	E0CXC6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000141397.2	4930558K02Rik-201	1011	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 7, Coding exons: 0, Transcript length: 1,011 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000141397.2

Type

Protein coding CDS not defined

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSMUST00000141397.2 4930558K02Rik-201

Summary

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Transcript: ENSMUST00000141397.2 4930558K02Rik-201

Summary

About Us

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