Transcript: ENSMUST00000139454.3 Gm28035-201

Description

predicted gene, 28035 [Source:MGI Symbol;Acc:MGI:5547771]

Location

About this transcript

This transcript has 13 exons, is annotated with 228 domains and features, is associated with 2335 variant alleles and maps to 229 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000139454.3	Gm28035-201	4238	810aa	ENSMUSP00000139038.2	Nonsense mediated decay	CCDS15875	Q80WG5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 13, Coding exons: 2, Transcript length: 4,238 bps, Translation length: 810 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q80WG5

CCDS

This transcript is a member of the Mouse CCDS set: CCDS15875

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000139454.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.