Mouse (GRCm39)
Description

LIM and calponin homology domains 1 [Source:MGI Symbol;Acc:MGI:1924819]

Gene Synonyms

3732412D22Rik

Location
About this transcript

This transcript has 5 exons, is annotated with 1 domain and feature, is associated with 11771 variant alleles and maps to 37 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000238785.2Limch1-21974981511aaENSMUSP00000158661.2
 
Protein coding
A0A571BG24 Ensembl CanonicalGENCODE basic
ENSMUST00000238993.2Limch1-2205981927aaENSMUSP00000159044.2
 
Protein coding
A0A5F8MPN3 GENCODE basic
ENSMUST00000038188.14Limch1-2015903901aaENSMUSP00000043163.8
 
Protein coding
CCDS57347Q3UH68-2 GENCODE basicTSL:1
ENSMUST00000101164.11Limch1-20251921057aaENSMUSP00000098723.5
 
Protein coding
CCDS39102Q3UH68 GENCODE basicAPPRIS P1TSL:5
ENSMUST00000118242.8Limch1-20450501068aaENSMUSP00000112732.2
 
Protein coding
D3YU22 GENCODE basicTSL:5
ENSMUST00000119854.8Limch1-2054185774aaENSMUSP00000112651.3
 
Protein coding
D3YU59 TSL:1CDS 5' incomplete
ENSMUST00000117601.8Limch1-2033157898aaENSMUSP00000113544.3
 
Protein coding
D3Z589 GENCODE basicTSL:5
ENSMUST00000132991.5Limch1-209876268aaENSMUSP00000123337.3
 
Protein coding
F6X3N8 TSL:2CDS 3' incomplete
ENSMUST00000127184.8Limch1-207852237aaENSMUSP00000114681.2
 
Protein coding
D3YV55 TSL:5CDS 3' incomplete
ENSMUST00000122812.5Limch1-20652029aaENSMUSP00000144176.2
 
Protein coding
A0A0J9YUH0 TSL:3CDS 3' incomplete
ENSMUST00000153174.2Limch1-21443560aaENSMUSP00000118979.2
 
Nonsense mediated decay
F6W1Y9 TSL:2CDS 5' incomplete
ENSMUST00000130228.2Limch1-20836083aaENSMUSP00000116126.2
 
Nonsense mediated decay
D6RHT2 TSL:5
ENSMUST00000201322.4Limch1-2153356No protein-
 
Protein coding CDS not defined
-TSL:5
ENSMUST00000135334.3Limch1-210735No protein-
 
Protein coding CDS not defined
-TSL:3
ENSMUST00000147050.8Limch1-213624No protein-
 
Protein coding CDS not defined
-TSL:3
ENSMUST00000202830.2Limch1-2182538No protein-
 
Retained intron
-TSL:NA
ENSMUST00000140428.8Limch1-2122458No protein-
 
Retained intron
-TSL:1
ENSMUST00000201852.4Limch1-2161018No protein-
 
Retained intron
-TSL:3
ENSMUST00000202048.2Limch1-217786No protein-
 
Retained intron
-TSL:2
ENSMUST00000137394.2Limch1-211680No protein-
 
Retained intron
-TSL:2
Statistics

Exons: 5, Coding exons: 4, Transcript length: 360 bps, Translation length: 83 residues

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000130228.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.