Transcript: ENSMUST00000119100.2 Speer4d-202

Description

spermatogenesis associated glutamate (E)-rich protein 4D [Source:MGI Symbol;Acc:MGI:2668869]

Gene Synonyms

SPEER-4D

Location

Chromosome 5: 15,825,160-15,828,609 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 8 domains and features, is associated with 669 variant alleles and maps to 132 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000070933.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000095006.9	Speer4d-201	1194	212aa	ENSMUSP00000092615.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS19095	L7N216	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000119100.2	Speer4d-202	857	160aa	ENSMUSP00000113289.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		L7N261	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 857 bps, Translation length: 160 residues

Transcript Support Level (TSL)

TSL:2

Version

ENSMUST00000119100.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000119100.2 Speer4d-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000119100.2 Speer4d-202

Summary

About Us

Get help

Our sister sites

Follow us