Transcript: ENSMUST00000115378.2 Rundc3b-202

Description

RUN domain containing 3B [Source:MGI Symbol;Acc:MGI:2685286]

Gene Synonyms

LOC242819

Location

Chromosome 5: 8,542,267-8,672,952 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 16 domains and features, is associated with 6114 variant alleles and maps to 114 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000040570.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000115378.2	Rundc3b-202	1891	457aa	ENSMUSP00000111036.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS84841	D3YUQ5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000047485.15	Rundc3b-201	3677	408aa	ENSMUSP00000040108.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS19083	Q6PDC0	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 1,891 bps, Translation length: 457 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS84841

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000115378.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

not organism-supported [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000115378.2 Rundc3b-202

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Transcript: ENSMUST00000115378.2 Rundc3b-202

Summary

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