Transcript: ENSMUST00000114585.3 Cd200l1-201

Description

CD200 molecule like 1 [Source:MGI Symbol;Acc:MGI:2685455]

Gene Synonyms

Gm609, LOC208166, LOC385647, iSEC1

Location

Chromosome 16: 45,237,118-45,313,332 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 12 domains and features, is associated with 4318 variant alleles and maps to 84 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000053182.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000114585.3	Cd200l1-201	2122	300aa	ENSMUSP00000110233.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28197	E9Q573	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000232138.2	Cd200l1-203	1695	187aa	ENSMUSP00000156066.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P6R0	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000144346.2	Cd200l1-202	3163	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 2,122 bps, Translation length: 300 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS28197

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000114585.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000114585.3 Cd200l1-201

Summary

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Transcript: ENSMUST00000114585.3 Cd200l1-201

Summary

About Us

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