Mouse (GRCm39)
Description

SMG7 nonsense mediated mRNA decay factor [Source:MGI Symbol;Acc:MGI:2682334]

Gene Synonyms

9430023P16Rik, Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)

About this transcript

This transcript has 23 exons, is annotated with 28 domains and features, is associated with 3007 variant alleles and maps to 196 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000043560.15Smg7-20157921146aaENSMUSP00000041241.9
 
Protein coding
CCDS48394Q5RJH6-2 Ensembl CanonicalGENCODE basicTSL:1
ENSMUST00000073441.13Smg7-20257671134aaENSMUSP00000073144.7
 
Protein coding
CCDS35740Q5RJH6-3 GENCODE basicAPPRIS P3TSL:1
ENSMUST00000111836.4Smg7-20339281138aaENSMUSP00000107467.3
 
Protein coding
CCDS48395Q5RJH6 GENCODE basicAPPRIS ALT1TSL:1
ENSMUST00000186900.2Smg7-205672No protein-
 
Protein coding CDS not defined
-TSL:3
ENSMUST00000186692.2Smg7-204574No protein-
 
Protein coding CDS not defined
-TSL:3
ENSMUST00000188937.2Smg7-206525No protein-
 
Retained intron
-TSL:3
Statistics

Exons: 23, Coding exons: 23, Transcript length: 3,928 bps, Translation length: 1,138 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5RJH6

CCDS

This transcript is a member of the Mouse CCDS set: CCDS48395

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000111836.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.