Transcript: ENSMUST00000108080.3 Pigw-202

Description

phosphatidylinositol glycan anchor biosynthesis, class W [Source:MGI Symbol;Acc:MGI:1917575]

Gene Synonyms

2610044A17Rik, Gwt1

Location

Chromosome 11: 84,767,669-84,771,111 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 18 domains and features, is associated with 687 variant alleles and maps to 67 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000045140.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000067058.3	Pigw-201	2675	503aa	ENSMUSP00000064547.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36263	B7ZN11 Q8C398	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000108080.3	Pigw-202	1728	503aa	ENSMUSP00000103715.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36263	B7ZN11 Q8C398	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 1,728 bps, Translation length: 503 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8C398

CCDS

This transcript is a member of the Mouse CCDS set: CCDS36263

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000108080.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000108080.3 Pigw-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000108080.3 Pigw-202

Summary

About Us

Get help

Our sister sites

Follow us