Transcript: ENSMUST00000106914.8 Gm12789-201

Description

predicted gene 12789 [Source:MGI Symbol;Acc:MGI:3649399]

Location

Chromosome 4: 101,843,823-101,847,250 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 2 domains and features, is associated with 719 variant alleles and maps to 70 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000078625.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000106914.8	Gm12789-201	883	164aa	ENSMUSP00000102527.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS38823	B1AUV7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000151553.2	Gm12789-202	656	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 883 bps, Translation length: 164 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS38823

Transcript Support Level (TSL)

TSL:3

Version

ENSMUST00000106914.8

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000106914.8 Gm12789-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000106914.8 Gm12789-201

Summary

About Us

Get help

Our sister sites

Follow us