Transcript: ENSMUST00000105646.3 Ajap1-201

Description

adherens junction associated protein 1 [Source:MGI Symbol;Acc:MGI:2685419]

Gene Synonyms

LOC230959

Location

Chromosome 4: 153,457,678-153,567,268 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 14 domains and features, is associated with 6531 variant alleles and maps to 210 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000039546.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000105646.3	Ajap1-201	3048	412aa	ENSMUSP00000101271.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS38987	A2ALI5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000149177.2	Ajap1-202	600	49aa	ENSMUSP00000116651.2	Nonsense mediated decay		D6RH95	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 3,048 bps, Translation length: 412 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: A2ALI5

CCDS

This transcript is a member of the Mouse CCDS set: CCDS38987

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000105646.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000105646.3 Ajap1-201

Summary

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Transcript: ENSMUST00000105646.3 Ajap1-201

Summary

About Us

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