Transcript: ENSMUST00000102600.4 Fndc5-201

Description

fibronectin type III domain containing 5 [Source:MGI Symbol;Acc:MGI:1917614]

Gene Synonyms

1500001L03Rik, PeP, Pxp

Location

Chromosome 4: 129,030,792-129,038,386 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 13 domains and features, is associated with 836 variant alleles and maps to 237 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000001334.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000249630.1	Fndc5-202	3078	240aa	ENSMUSP00000159833.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSMUST00000102600.4	Fndc5-201	2763	209aa	ENSMUSP00000099660.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS18683	Q8K4Z2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 2,763 bps, Translation length: 209 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8K4Z2

CCDS

This transcript is a member of the Mouse CCDS set: CCDS18683

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000102600.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000102600.4 Fndc5-201

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Transcript: ENSMUST00000102600.4 Fndc5-201

Summary

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