Transcript: ENSMUST00000099830.3 Or5d43-201

Description

olfactory receptor family 5 subfamily D member 43 [Source:MGI Symbol;Acc:MGI:3031007]

Gene Synonyms

GA_x6K02T2Q125-49759783-49758845, MOR174-20_p, Olfr1173

Location

Chromosome 2: 88,103,384-88,110,219 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 23 domains and features, is associated with 915 variant alleles and maps to 66 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000075132.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000216887.2	Or5d43-202	5363	312aa	ENSMUSP00000149617.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS16330	Q7TR24	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000099830.3	Or5d43-201	2268	312aa	ENSMUSP00000097418.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS16330	Q7TR24	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 2,268 bps, Translation length: 312 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS16330

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000099830.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000099830.3 Or5d43-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000099830.3 Or5d43-201

Summary

About Us

Get help

Our sister sites

Follow us