Transcript: ENSMUST00000091749.4 H2bc23-201

Description

H2B clustered histone 23 [Source:MGI Symbol;Acc:MGI:3702051]

Gene Synonyms

Gm13646, Hist1h2bq

Location

Chromosome 13: 21,991,447-21,994,367 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 16 domains and features, is associated with 120 variant alleles and maps to 444 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000069307.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000091749.4	H2bc23-201	1254	134aa	ENSMUSP00000089343.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49213	Q8CBB6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000110469.2	H2bc23-202	2015	126aa	ENSMUSP00000106095.2	Nonsense mediated decay	CCDS84010	P10853	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 1,254 bps, Translation length: 134 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS49213

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000091749.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000091749.4 H2bc23-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000091749.4 H2bc23-201

Summary

About Us

Get help

Our sister sites

Follow us