Transcript: ENSMUST00000088450.4 Xlr5c-201

Description

X-linked lymphocyte-regulated 5C [Source:MGI Symbol;Acc:MGI:1350981]

Gene Synonyms

Xlr5

Location

Chromosome X: 72,328,803-72,334,121 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 9 domains and features, is associated with 880 variant alleles and maps to 279 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000067764.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000114503.9	Xlr5c-202	1656	236aa	ENSMUSP00000110147.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2AIE6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000088450.4	Xlr5c-201	540	179aa	ENSMUSP00000085796.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30198	Q9JJR2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 540 bps, Translation length: 179 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9JJR2

CCDS

This transcript is a member of the Mouse CCDS set: CCDS30198

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000088450.4

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000088450.4 Xlr5c-201

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Transcript: ENSMUST00000088450.4 Xlr5c-201

Summary

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