Transcript: ENSMUST00000076228.3 Rcc1l-201

Description

reculator of chromosome condensation 1 like [Source:MGI Symbol;Acc:MGI:2137600]

Gene Synonyms

5730496C04Rik, Wbscr16

Location

Chromosome 5: 134,176,893-134,205,613 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 25 domains and features, is associated with 2285 variant alleles and maps to 186 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000061979.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000076228.3	Rcc1l-201	2321	461aa	ENSMUSP00000075581.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS19718	Q548B0 Q9CYF5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000126113.8	Rcc1l-202	772	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000156574.2	Rcc1l-203	679	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 2,321 bps, Translation length: 461 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9CYF5

CCDS

This transcript is a member of the Mouse CCDS set: CCDS19718

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000076228.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000076228.3 Rcc1l-201

Summary

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Transcript: ENSMUST00000076228.3 Rcc1l-201

Summary

About Us

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