Transcript: ENSMUST00000072835.7 Ccdc112-201

Description

coiled-coil domain containing 112 [Source:MGI Symbol;Acc:MGI:1918800]

Gene Synonyms

8430438M01Rik

Location

Chromosome 18: 46,415,218-46,444,995 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 22 domains and features, is associated with 2204 variant alleles and maps to 224 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000071855.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000072835.7	Ccdc112-201	2801	525aa	ENSMUSP00000072614.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50281	D3Z1J2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000238189.2	Ccdc112-205	761	220aa	ENSMUSP00000158529.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BBM3	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000236934.2	Ccdc112-203	643	214aa	ENSMUSP00000158298.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BB34	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000237152.2	Ccdc112-204	556	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000235609.2	Ccdc112-202	1766	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 2,801 bps, Translation length: 525 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS50281

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000072835.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

not organism-supported [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000072835.7 Ccdc112-201

Summary

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Transcript: ENSMUST00000072835.7 Ccdc112-201

Summary

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