Transcript: ENSMUST00000067246.6 Slc30a5-201

Description

solute carrier family 30 (zinc transporter), member 5 [Source:MGI Symbol;Acc:MGI:1916298]

Gene Synonyms

1810010K08Rik, ZTL1, ZnT-5, Znt5, Zntl1

Location

Chromosome 13: 100,939,156-100,969,935 reverse strand.

About this transcript

This transcript has 16 exons, is annotated with 27 domains and features, is associated with 2163 variant alleles and maps to 330 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000021629.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000067246.6	Slc30a5-201	3179	761aa	ENSMUSP00000065764.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS26739	Q8R4H9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000225922.2	Slc30a5-205	2722	704aa	ENSMUSP00000153587.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YDV6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000225086.2	Slc30a5-203	2022	153aa	ENSMUSP00000153319.2	Nonsense mediated decay		A0A286YD86	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000224177.2	Slc30a5-202	4000	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000225129.2	Slc30a5-204	589	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 3,179 bps, Translation length: 761 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8R4H9

CCDS

This transcript is a member of the Mouse CCDS set: CCDS26739

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000067246.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000067246.6 Slc30a5-201

Summary

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Transcript: ENSMUST00000067246.6 Slc30a5-201

Summary

About Us

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