Transcript: ENSMUST00000060762.6 Zfp397-201

Description

zinc finger protein 397 [Source:MGI Symbol;Acc:MGI:1916506]

Gene Synonyms

2810411K16Rik, 6720480F11Rik

Location

Chromosome 18: 24,087,762-24,097,730 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 60 domains and features, is associated with 791 variant alleles and maps to 248 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000024276.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000060762.6	Zfp397-201	5472	527aa	ENSMUSP00000057253.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29096	Q7TNK4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000225682.2	Zfp397-204	557	45aa	ENSMUSP00000152930.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YCD9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000223595.2	Zfp397-202	402	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000224107.2	Zfp397-203	3604	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 5,472 bps, Translation length: 527 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29096

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000060762.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000060762.6 Zfp397-201

Summary

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Transcript: ENSMUST00000060762.6 Zfp397-201

Summary

About Us

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