Transcript: ENSMUST00000050092.7 Zfp518a-201

Description

zinc finger protein 518A [Source:MGI Symbol;Acc:MGI:1919922]

Gene Synonyms

2810401C22Rik, 6330417C12Rik, Zfp518

Location

Chromosome 19: 40,883,149-40,906,391 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 29 domains and features, is associated with 1405 variant alleles and maps to 229 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000049164.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000050092.7	Zfp518a-201	6840	1478aa	ENSMUSP00000055956.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37982	B2RRF6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000235207.2	Zfp518a-202	6568	1478aa	ENSMUSP00000158039.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37982	B2RRF6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000235235.2	Zfp518a-203	1345	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 5, Coding exons: 1, Transcript length: 6,840 bps, Translation length: 1,478 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: B2RRF6

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37982

Transcript Support Level (TSL)

TSL:2

Version

ENSMUST00000050092.7

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000050092.7 Zfp518a-201

Summary

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Transcript: ENSMUST00000050092.7 Zfp518a-201

Summary

About Us

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