Transcript: ENSMUST00000042090.8 Vmn2r107-201

Description

vomeronasal 2, receptor 107 [Source:MGI Symbol;Acc:MGI:1316664]

Gene Synonyms

V2r6

Location

About this transcript

This transcript has 6 exons, is annotated with 40 domains and features, is associated with 3501 variant alleles and maps to 92 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000042090.8	Vmn2r107-201	10110	861aa	ENSMUSP00000048706.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49984	E9PZJ7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000233836.2	Vmn2r107-203	10291	196aa	ENSMUSP00000156773.2	Nonsense mediated decay		A0A3B2W7Y7	-
ENSMUST00000233421.2	Vmn2r107-202	9941	76aa	ENSMUSP00000156595.2	Nonsense mediated decay		A0A3B2WCN1	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 10,110 bps, Translation length: 861 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS49984

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000042090.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.