Transcript: ENSMUST00000040791.9 Nipal2-201

Description

NIPA-like domain containing 2 [Source:MGI Symbol;Acc:MGI:1924488]

Gene Synonyms

9330161F08Rik, Npal2

Location

Chromosome 15: 34,572,945-34,679,358 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 15 domains and features, is associated with 5294 variant alleles and maps to 244 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000038879.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000040791.9	Nipal2-201	4331	383aa	ENSMUSP00000038922.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37058	A0A0R4J0G3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000228073.2	Nipal2-205	535	71aa	ENSMUSP00000153811.2	Nonsense mediated decay		A0A2I3BPJ8	-
ENSMUST00000228679.2	Nipal2-206	483	71aa	ENSMUSP00000153915.2	Nonsense mediated decay		A0A2I3BPT9	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000227336.2	Nipal2-204	3243	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000227126.2	Nipal2-202	1417	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000227222.2	Nipal2-203	692	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 4,331 bps, Translation length: 383 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37058

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000040791.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000040791.9 Nipal2-201

Summary

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Transcript: ENSMUST00000040791.9 Nipal2-201

Summary

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