Transcript: ENSMUST00000040416.8 Ddx19a-201

Description

DEAD box helicase 19a [Source:MGI Symbol;Acc:MGI:99526]

Gene Synonyms

DBP5, DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a, Ddx19, Eif4a-rs1

Location

Chromosome 8: 111,701,628-111,724,432 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 16 domains and features, is associated with 1411 variant alleles and maps to 290 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000015023.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000040416.8	Ddx19a-201	2547	478aa	ENSMUSP00000047898.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS22668	Q61655	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000130133.2	Ddx19a-202	754	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000173183.2	Ddx19a-203	731	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 2,547 bps, Translation length: 478 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q61655

CCDS

This transcript is a member of the Mouse CCDS set: CCDS22668

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000040416.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000040416.8 Ddx19a-201

Summary

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Transcript: ENSMUST00000040416.8 Ddx19a-201

Summary

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