Transcript: ENSMUST00000039121.4 Fam170a-201

Description

family with sequence similarity 170, member A [Source:MGI Symbol;Acc:MGI:2684939]

Gene Synonyms

LOC225497, Znfd

Location

Chromosome 18: 50,411,436-50,416,087 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 15 domains and features, is associated with 596 variant alleles and maps to 127 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000035420.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000238078.2	Fam170a-203	1394	370aa	ENSMUSP00000158194.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BAQ9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSMUST00000039121.4	Fam170a-201	1343	333aa	ENSMUSP00000035910.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29243	Q66LM6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000238113.2	Fam170a-204	1335	57aa	ENSMUSP00000158112.2	Nonsense mediated decay		A0A494BAJ2	-
ENSMUST00000236949.2	Fam170a-202	1223	57aa	ENSMUSP00000158518.2	Nonsense mediated decay		A0A494BAJ2	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,343 bps, Translation length: 333 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q66LM6

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29243

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000039121.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000039121.4 Fam170a-201

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Transcript: ENSMUST00000039121.4 Fam170a-201

Summary

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