Transcript: ENSMUST00000025406.9 Srfbp1-201

Description

serum response factor binding protein 1 [Source:MGI Symbol;Acc:MGI:1914472]

Gene Synonyms

2810036K01Rik

Location

Chromosome 18: 52,598,765-52,625,003 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 16 domains and features, is associated with 2593 variant alleles and maps to 237 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000024528.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000025406.9	Srfbp1-201	2656	441aa	ENSMUSP00000025406.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37819	Q9CZ91	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000237229.2	Srfbp1-204	702	77aa	ENSMUSP00000158232.2	Nonsense mediated decay		A0A494BAY6	-
ENSMUST00000237092.2	Srfbp1-203	882	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000235538.2	Srfbp1-202	710	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000237434.2	Srfbp1-205	550	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000238100.2	Srfbp1-206	537	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 2,656 bps, Translation length: 441 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9CZ91

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37819

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000025406.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000025406.9 Srfbp1-201

Summary

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Transcript: ENSMUST00000025406.9 Srfbp1-201

Summary

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