Transcript: ENSMUST00000024981.9 Jpt2-201

Description

Jupiter microtubule associated homolog 2 [Source:MGI Symbol;Acc:MGI:1196260]

Gene Synonyms

2810430B18Rik, D17Ertd441e, Hn1l

Location

Chromosome 17: 25,161,444-25,179,663 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 7 domains and features, is associated with 1485 variant alleles and maps to 204 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000024165.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000024981.9	Jpt2-201	2672	190aa	ENSMUSP00000024981.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28504	Q3TM10 Q6PGH2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000233067.2	Jpt2-203	1430	190aa	ENSMUSP00000156651.2	Nonsense mediated decay	CCDS28504	Q3TM10 Q6PGH2	-
ENSMUST00000232978.2	Jpt2-202	501	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000233481.2	Jpt2-205	445	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000233316.2	Jpt2-204	1705	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 2,672 bps, Translation length: 190 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6PGH2

CCDS

This transcript is a member of the Mouse CCDS set: CCDS28504

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000024981.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000024981.9 Jpt2-201

Summary

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Transcript: ENSMUST00000024981.9 Jpt2-201

Summary

About Us

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