Transcript: ENSMUST00000023391.16 Mrpl40-201

Description

mitochondrial ribosomal protein L40 [Source:MGI Symbol;Acc:MGI:1332635]

Gene Synonyms

Nlvcf

Location

Chromosome 16: 18,690,768-18,695,612 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 7 domains and features, is associated with 630 variant alleles and maps to 166 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000022706.17 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000023391.16	Mrpl40-201	1280	206aa	ENSMUSP00000023391.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28030	Q3UKS6 Q9Z2Q5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000119273.2	Mrpl40-202	778	162aa	ENSMUSP00000113065.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3Z7C0	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000232123.2	Mrpl40-203	675	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,280 bps, Translation length: 206 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Z2Q5

CCDS

This transcript is a member of the Mouse CCDS set: CCDS28030

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000023391.16

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000023391.16 Mrpl40-201

Summary

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Transcript: ENSMUST00000023391.16 Mrpl40-201

Summary

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