Transcript: ENSMUST00000023219.9 Fbxl6-201

Description

F-box and leucine-rich repeat protein 6 [Source:MGI Symbol;Acc:MGI:1354705]

Location

Chromosome 15: 76,419,921-76,422,935 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 16 domains and features, is associated with 621 variant alleles and maps to 183 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000022559.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000023219.9	Fbxl6-201	1710	535aa	ENSMUSP00000023219.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49653	Q9QXW0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000230938.2	Fbxl6-206	570	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000229813.2	Fbxl6-204	2091	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000230513.2	Fbxl6-205	1953	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000228994.2	Fbxl6-202	586	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000229273.2	Fbxl6-203	336	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,710 bps, Translation length: 535 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9QXW0

CCDS

This transcript is a member of the Mouse CCDS set: CCDS49653

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000023219.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000023219.9 Fbxl6-201

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Transcript: ENSMUST00000023219.9 Fbxl6-201

Summary

About Us

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