Mouse (GRCm39)
Description

collagen, type II, alpha 1 [Source:MGI Symbol;Acc:MGI:88452]

Gene Synonyms

Col2, Col2a, Col2a-1, Del1, Lpk, M100413, M100856, Rgsc413, Rgsc856

Location
About this transcript

This transcript has 54 exons, is annotated with 82 domains and features, is associated with 2094 variant alleles and maps to 462 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000023123.15Col2a1-20151041487aaENSMUSP00000023123.9
 
Protein coding
CCDS37189P28481 Ensembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENSMUST00000088355.12Col2a1-20248621419aaENSMUSP00000085693.6
 
Protein coding
CCDS49716P28481-7 GENCODE basicTSL:1
ENSMUST00000127879.2Col2a1-203715No protein-
 
Protein coding CDS not defined
-TSL:3
ENSMUST00000133488.8Col2a1-207626No protein-
 
Protein coding CDS not defined
-TSL:5
ENSMUST00000131560.3Col2a1-205575No protein-
 
Protein coding CDS not defined
-TSL:3
ENSMUST00000128547.2Col2a1-204491No protein-
 
Protein coding CDS not defined
-TSL:3
ENSMUST00000230148.2Col2a1-2103666No protein-
 
Retained intron
--
ENSMUST00000139246.8Col2a1-208809No protein-
 
Retained intron
-TSL:5
ENSMUST00000131910.8Col2a1-206654No protein-
 
Retained intron
-TSL:5
ENSMUST00000140064.2Col2a1-209613No protein-
 
Retained intron
-TSL:2
Statistics

Exons: 54, Coding exons: 54, Transcript length: 5,104 bps, Translation length: 1,487 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P28481

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37189

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000023123.15

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.