Transcript: ENSMUST00000022727.10 Tgds-201

Description

TDP-glucose 4,6-dehydratase [Source:MGI Symbol;Acc:MGI:1923605]

Gene Synonyms

2610017J16Rik, 2610025M23Rik

Location

Chromosome 14: 118,349,888-118,370,159 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 7 domains and features, is associated with 1943 variant alleles and maps to 226 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000022130.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000022727.10	Tgds-201	1682	355aa	ENSMUSP00000022727.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27332	Q8VDR7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000228543.2	Tgds-204	1594	343aa	ENSMUSP00000154426.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9D0D1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000227350.2	Tgds-202	2153	95aa	ENSMUSP00000153859.2	Nonsense mediated decay		A0A2I3BPN7	-
ENSMUST00000228085.2	Tgds-203	350	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 1,682 bps, Translation length: 355 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8VDR7

CCDS

This transcript is a member of the Mouse CCDS set: CCDS27332

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000022727.10

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000022727.10 Tgds-201

Summary

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Transcript: ENSMUST00000022727.10 Tgds-201

Summary

About Us

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