Transcript: ENSMUST00000022340.5 Nid2-201

Description

nidogen 2 [Source:MGI Symbol;Acc:MGI:1298229]

Gene Synonyms

entactin 2, entactin-2

Location

Chromosome 14: 19,801,333-19,861,855 forward strand.

About this transcript

This transcript has 21 exons, is annotated with 78 domains and features, is associated with 3889 variant alleles and maps to 319 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000021806.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000022340.5	Nid2-201	4876	1403aa	ENSMUSP00000022340.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36813	O88322	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000224263.2	Nid2-203	4105	1171aa	ENSMUSP00000153102.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YCQ5	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000225791.2	Nid2-204	3976	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000224057.2	Nid2-202	543	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 21, Coding exons: 21, Transcript length: 4,876 bps, Translation length: 1,403 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O88322

CCDS

This transcript is a member of the Mouse CCDS set: CCDS36813

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000022340.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000022340.5 Nid2-201

Summary

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Transcript: ENSMUST00000022340.5 Nid2-201

Summary

About Us

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