Transcript: ENSMUST00000016781.8 Ift27-201

Description

intraflagellar transport 27 [Source:MGI Symbol;Acc:MGI:1914292]

Gene Synonyms

2600013G09Rik, Rabl4

Location

Chromosome 15: 78,043,663-78,058,307 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 15 domains and features, is associated with 1565 variant alleles and maps to 289 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000016637.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000016781.8	Ift27-201	1013	186aa	ENSMUSP00000016781.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37131	Q9D0P8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000230844.2	Ift27-204	760	163aa	ENSMUSP00000155127.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VHI2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000229476.2	Ift27-203	375	99aa	ENSMUSP00000155736.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VI57	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000229417.2	Ift27-202	483	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000231069.2	Ift27-205	1569	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,013 bps, Translation length: 186 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9D0P8

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37131

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000016781.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000016781.8 Ift27-201

Summary

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Transcript: ENSMUST00000016781.8 Ift27-201

Summary

About Us

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