Transcript: ENSMUST00000009740.9 Taf7l-201

Description

TATA-box binding protein associated factor 7 like [Source:MGI Symbol;Acc:MGI:1921719]

Gene Synonyms

4933438I11Rik, Taf2q

Location

Chromosome X: 133,360,867-133,377,239 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 14 domains and features, is associated with 1312 variant alleles and maps to 180 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000009596.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000009740.9	Taf7l-201	1933	471aa	ENSMUSP00000009740.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53184	Q9D3R9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000113223.3	Taf7l-202	1155	350aa	ENSMUSP00000108849.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AV36	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000131311.2	Taf7l-203	660	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 1,933 bps, Translation length: 471 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9D3R9

CCDS

This transcript is a member of the Mouse CCDS set: CCDS53184

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000009740.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000009740.9 Taf7l-201

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Transcript: ENSMUST00000009740.9 Taf7l-201

Summary

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