Transcript: ENSMUST00000004156.10 Map3k11-201

Description

mitogen-activated protein kinase kinase kinase 11 [Source:MGI Symbol;Acc:MGI:1346880]

Gene Synonyms

2610017K16Rik, Mlk3

Location

Chromosome 19: 5,739,065-5,752,893 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 50 domains and features, is associated with 976 variant alleles and maps to 188 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000004054.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000004156.10	Map3k11-201	3898	850aa	ENSMUSP00000004156.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29476	Q80XI6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000235661.2	Map3k11-202	363	68aa	ENSMUSP00000158271.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BAX3	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000235891.2	Map3k11-204	2885	543aa	ENSMUSP00000158463.2	Nonsense mediated decay		A0A494BBI0	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000237032.2	Map3k11-205	670	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000235727.2	Map3k11-203	441	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 12, Coding exons: 10, Transcript length: 3,898 bps, Translation length: 850 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q80XI6

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29476

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000004156.10

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000004156.10 Map3k11-201

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Transcript: ENSMUST00000004156.10 Map3k11-201

Summary

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