Transcript: ENSMUST00000002551.5 Snrpd1-201

Description

small nuclear ribonucleoprotein D1 [Source:MGI Symbol;Acc:MGI:98344]

Gene Synonyms

SMD1

Location

Chromosome 18: 10,617,775-10,628,230 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 13 domains and features, is associated with 969 variant alleles and maps to 216 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000002477.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000002551.5	Snrpd1-201	858	119aa	ENSMUSP00000002551.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29056	P62315	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000235020.2	Snrpd1-205	670	98aa	ENSMUSP00000157119.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4L2W0	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000234207.2	Snrpd1-203	439	78aa	ENSMUSP00000157360.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4L381	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000234077.2	Snrpd1-202	578	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000234728.2	Snrpd1-204	439	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 858 bps, Translation length: 119 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P62315

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29056

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000002551.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000002551.5 Snrpd1-201

Summary

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Transcript: ENSMUST00000002551.5 Snrpd1-201

Summary

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