Transcript: ENSMUST00000000275.10 Glra3-201

Description

glycine receptor, alpha 3 subunit [Source:MGI Symbol;Acc:MGI:95749]

Location

Chromosome 8: 56,393,544-56,583,105 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 33 domains and features, is associated with 10198 variant alleles and maps to 207 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000038257.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000239388.2	Glra3-203	1474	480aa	ENSMUSP00000159349.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS40340	G5E811	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000000275.10	Glra3-201	6508	464aa	ENSMUSP00000000275.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G5E811 Q91XP5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000164020.2	Glra3-202	3586	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 6,508 bps, Translation length: 464 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q91XP5

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000000275.10

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

upstream ATG [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000000275.10 Glra3-201

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Transcript: ENSMUST00000000275.10 Glra3-201

Summary

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