Gene: Nr4a1 ENSMUSG00000023034

Description

nuclear receptor subfamily 4, group A, member 1 [Source:MGI Symbol;Acc:MGI:1352454]

Gene Synonyms

GFRP1, Gfrp, Hbr-1, Hbr1, Hmr, N10, NGFI-B, NP10, Nur77, TIS1, TR3

Location

Chromosome 15: 101,152,150-101,172,676 forward strand.

GRCm39:CM001008.3

About this gene

This gene has 4 transcripts (splice variants), 268 orthologues, 2 paralogues and is associated with 8 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000228985.2	Nr4a1-202	2553	601aa	ENSMUSP00000155225.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27848	P12813 Q545Q1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000023779.8	Nr4a1-201	2477	601aa	ENSMUSP00000023779.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27848	P12813 Q545Q1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000230814.2	Nr4a1-203	344	13aa	ENSMUSP00000155056.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VJZ1	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000231153.2	Nr4a1-204	893	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Gene: Nr4a1 ENSMUSG00000023034

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Gene: Nr4a1 ENSMUSG00000023034

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