Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL9A1 ENSMMUG00000005577

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Description

collagen type IX alpha 1 chain [Source:VGNC Symbol;Acc:VGNC:71306]

Location

Primary_assembly 4: 102,442,193-102,618,945 forward strand.

Mmul_10:CM014339.1

About this gene

This gene has 4 transcripts (splice variants), 197 orthologues and 36 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSMMUT00000007857.4	COL9A1-202	3623	921aa	ENSMMUP00000007384.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F7G4H9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSMMUT00000093023.1	COL9A1-203	3001	678aa	ENSMMUP00000065651.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I2CTW6	-
ENSMMUT00000007859.4	COL9A1-201	2706	901aa	ENSMMUP00000007386.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F7G4G7	-
ENSMMUT00000007860.4	COL9A1-204	2544	646aa	ENSMMUP00000007387.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F7G4F5	-

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Summary

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